Selected Publications & Preprints

Lambourne L*, Mattioli K*†, Santoso C*, Sheynkman G, Inukai S, Kaundal B, Berenson A, Spirohn-Fitzgerald K, Bhattacharjee A, Rothman E, Shrestha S, Laval F, Yang Z, Bisht D, Sewell JA, Li G, Prasad A, Phanor S, Lane R, Campbell DM, Hunt T, Balcha D, Gebbia M, Twizere J, Hao T, Frankish A, Riback JA, Salomonis N, Calderwood MA, Hill DE, Sahni N†, Vidal M†, Bulyk ML†, Fuxman Bass JI†. “Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms.” bioRxiv 2024. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11014633/

Haswell JR*, Mattioli K*, Gerhardinger C, Maass PG, Foster DJ, Peinado P, Wang X, Medina PP, Rinn JL, Slack FJ. “Genome-wide CRISPR interference screen identifies long non-coding RNA loci required for differentiation and pluripotency.” PLOS ONE 2021. https://doi.org/10.1371/journal.pone.0252848

Mattioli K, Oliveros W, Gerhardinger C, Andergassen D, Maass PG, Rinn JL, Melé M. “Cis and trans effects differentially contribute to the evolution of promoters and enhancers.” Genome Biology 2020. https://doi.org/10.1186/s13059-020-02110-3

Mattioli K, Volders PJ, Gerhardinger C, Lee JC, Maass PG, Melé M*, Rinn JL*. “High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity.” Genome Research 2019. https://doi.org/10.1101/gr.242222.118

Melé M, Mattioli K, Mallard W, Shechner DM, Gerhardinger C, Rinn JL. “Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs.” Genome Research 2017. https://doi.org/10.1101/gr.214205.116

* = equal contribution

† = corresponding author

for a full list of publications please see my CV or Google Scholar

Selected other media